STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2241TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: bcm:Bcenmc03_2357 benzoate transporter. (407 aa)    
Predicted Functional Partners:
DvMF_2123
TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; KEGG: dde:Dde_3474 chromosome replication initiation inhibitor protein.
  
     0.540
DvMF_0235
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pst:PSPTO_3452 amino acid transporter LysE.
 
    0.496
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.439
DvMF_3196
Hypothetical protein; KEGG: dde:Dde_3620 amino acid ABC transporter periplasmic protein.
  
     0.401
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.