Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_2260PFAM: cobalamin synthesis protein P47K; KEGG: cte:CT1756 hypothetical protein. (259 aa)    
Predicted Functional Partners:
DvMF_2259
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: glo:Glov_1037 ABC transporter related.
 
  
 0.962
DvMF_2261
KEGG: rpa:RPA1389 hypothetical protein.
 
   
 0.955
DvMF_3166
PFAM: hydrogenase expression/synthesis HypA; KEGG: dde:Dde_1308 hydrogenase nickel insertion protein HypA, putative.
  
 0.879
hypA
Hydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
  
 0.879
DvMF_1013
PFAM: peptidylprolyl isomerase FKBP-type; KEGG: dde:Dde_2668 peptidyl-prolyl cis-trans isomerase, FKBP-type.
    
 
 0.752
hypD
PFAM: hydrogenase formation HypD protein; KEGG: dde:Dde_0364 hydrogenase expression/formation protein HypD; Belongs to the HypD family.
  
  
 0.721
DvMF_0268
TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: dde:Dde_2140 hydrogenase assembly chaperone HypC/HupF.
  
  
 0.714
DvMF_1522
PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: tte:TTE0127 NADH:ubiquinone oxidoreductase 49 kD subunit 7.
   
 
 0.512
DvMF_3189
NADH dehydrogenase (quinone); PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: chy:CHY_1827 carbon monoxide-induced hydrogenase, large subunit.
   
 
 0.512
DvMF_2323
KEGG: pvi:Cvib_0830 hypothetical protein.
  
     0.494
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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