Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_2261KEGG: rpa:RPA1389 hypothetical protein. (361 aa)    
Predicted Functional Partners:
DvMF_2259
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: glo:Glov_1037 ABC transporter related.
 
   
 0.955
DvMF_2260
PFAM: cobalamin synthesis protein P47K; KEGG: cte:CT1756 hypothetical protein.
 
   
 0.955
DvMF_0241
PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_1703 hypothetical protein.
  
  
 0.663
DvMF_1588
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pmu:PM1455 AfuB.
  
  
 0.649
DvMF_2348
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0308 ABC transporter, permease protein, putative.
  
  
 0.649
DvMF_2349
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0309 ABC transporter, permease protein, putative.
  
  
 0.649
DvMF_2262
Hypothetical protein; KEGG: dde:Dde_3246 methyl-accepting chemotaxis sensory transducer.
       0.486
DvMF_2009
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.427
DvMF_2212
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.427
DvMF_1878
PFAM: Hemerythrin HHE cation binding domain protein; KEGG: gbm:Gbem_2562 hemerythrin HHE cation binding domain protein.
  
     0.409
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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