Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2265PFAM: regulatory protein MarR; KEGG: ckl:CKL_0340 transcriptional regulator. (296 aa)    
Predicted Functional Partners:
DvMF_2161
PFAM: regulatory protein MarR; KEGG: psp:PSPPH_1519 MarR family transcriptional regulator.
  
     0.625
DvMF_1429
PFAM: regulatory protein MarR; KEGG: dps:DP1862 transcriptional regulator.
  
     0.550
DvMF_1558
PFAM: regulatory protein MarR; KEGG: pmy:Pmen_1814 transcriptional regulator, MarR family.
  
     0.491
DvMF_2266
KEGG: dde:Dde_0063 putative lipoprotein.
       0.453
DvMF_2267
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: dde:Dde_0064 hypothetical protein.
       0.453
DvMF_2974
Transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; KEGG: dde:Dde_1352 putative transcriptional regulator.
  
  
 0.417
DvMF_2167
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: dsy:DSY3432 hypothetical protein.
  
     0.414
DvMF_2660
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.408
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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