STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2266KEGG: dde:Dde_0063 putative lipoprotein. (512 aa)    
Predicted Functional Partners:
DvMF_2267
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: dde:Dde_0064 hypothetical protein.
 
     0.928
DvMF_0539
PFAM: cytochrome c class I; KEGG: dde:Dde_1821 cytochrome c-553.
  
   
 0.717
DvMF_0538
Cytochrome c class I; Natural electron acceptor for a formate dehydrogenase.
  
   
 0.716
DvMF_1470
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: dde:Dde_3013 ErfK/YbiS/YcfS/YnhG family protein.
 
   
 0.686
DvMF_1106
KEGG: dde:Dde_2556 phage uncharacterized protein-like.
  
     0.567
DvMF_3051
PFAM: protein of unknown function DUF88; KEGG: dde:Dde_2484 hypothetical protein.
  
     0.522
DvMF_2978
KEGG: dde:Dde_1354 hypothetical protein.
  
     0.464
DvMF_2265
PFAM: regulatory protein MarR; KEGG: ckl:CKL_0340 transcriptional regulator.
       0.453
DvMF_0967
Putative transcriptional regulator, XRE family; PFAM: CBS domain containing protein; KEGG: dde:Dde_2604 CBS domain-containing protein.
  
     0.428
DvMF_1664
KEGG: mag:amb1193 hypothetical protein.
  
     0.415
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.