STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2267PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: dde:Dde_0064 hypothetical protein. (344 aa)    
Predicted Functional Partners:
DvMF_2266
KEGG: dde:Dde_0063 putative lipoprotein.
 
     0.928
DvMF_2796
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2755 TPR repeat-containing protein.
  
     0.660
DvMF_1106
KEGG: dde:Dde_2556 phage uncharacterized protein-like.
  
     0.639
DvMF_0113
KEGG: dde:Dde_2213 hypothetical protein.
  
     0.588
DvMF_0115
KEGG: dde:Dde_2212 hypothetical protein.
  
     0.548
DvMF_3051
PFAM: protein of unknown function DUF88; KEGG: dde:Dde_2484 hypothetical protein.
  
     0.530
DvMF_2978
KEGG: dde:Dde_1354 hypothetical protein.
  
     0.512
DvMF_1664
KEGG: mag:amb1193 hypothetical protein.
 
     0.468
DvMF_1334
PFAM: response regulator receiver; KEGG: dde:Dde_2384 response regulator receiver domain-containing protein.
  
     0.467
DvMF_0871
KEGG: dde:Dde_2351 hypothetical protein.
  
     0.453
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.