STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2275SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_0365 metal dependent phosphohydrolase. (245 aa)    
Predicted Functional Partners:
DvMF_0815
KEGG: dde:Dde_1543 hypothetical protein.
 
     0.759
DvMF_1755
PFAM: phosphoesterase RecJ domain protein; KEGG: dde:Dde_3494 DHH family protein.
 
   
 0.703
DvMF_3088
KEGG: dde:Dde_2441 hypothetical protein.
 
     0.658
DvMF_1943
PFAM: ribonuclease II; KEGG: dde:Dde_0173 RNB-like family protein.
 
   
 0.623
DvMF_3121
KEGG: dde:Dde_1466 putative lipoprotein.
  
     0.620
DvMF_2274
Three-deoxy-D-manno-octulosonic-acid transferase domain protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
       0.619
DvMF_2272
KEGG: dde:Dde_0372 hypothetical protein.
 
  
 0.617
DvMF_0363
SMART: TRASH domain protein; KEGG: dde:Dde_1968 TRASH.
  
     0.614
DvMF_2025
KEGG: dde:Dde_0121 hypothetical protein.
  
     0.610
DvMF_0857
PFAM: Cupin 2 conserved barrel domain protein; KEGG: dde:Dde_2303 hypothetical protein.
  
     0.608
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.