Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DvMF_2283PFAM: TPR repeat-containing protein; KEGG: dde:Dde_0357 TPR repeat-containing protein. (186 aa)    
Predicted Functional Partners:
DvMF_1546
KEGG: dde:Dde_0564 hypothetical protein.
  
    0.929
DvMF_3167
PFAM: Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_1309 TPR domain-containing protein.
 
 
 
 0.803
DvMF_1136
SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2717 TPR repeat-containing protein.
 
  
 0.785
DvMF_1463
PFAM: TPR repeat-containing protein; response regulator receiver; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_3006 response regulator receiver domain-containing protein.
 
 
 
 0.779
DvMF_0934
SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2717 TPR repeat-containing protein.
 
  
 0.776
DvMF_2369
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_3645 TPR repeat-containing protein.
 
   
 0.764
DvMF_2790
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_1667 TPR repeat-containing protein.
 
  
 0.761
DvMF_2586
KEGG: dde:Dde_0639 hypothetical protein.
  
    0.749
DvMF_2326
KEGG: dde:Dde_1667 TPR repeat-containing protein.
 
  
 0.747
DvMF_3199
KEGG: dde:Dde_2327 hypothetical protein.
  
     0.741
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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