STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2291PFAM: phosphoesterase PA-phosphatase related; KEGG: dde:Dde_0373 phosphoesterase, PA-phosphatase related. (250 aa)    
Predicted Functional Partners:
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 0.816
DvMF_0256
PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_1725 long-chain-fatty-acid--CoA ligase.
    
 0.767
DvMF_2357
PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_0557 acyl-CoA synthetase.
    
 0.767
DvMF_2292
PFAM: Peptidase M23; KEGG: dde:Dde_0243 M24/M37 family peptidase.
  
    0.724
DvMF_2632
KEGG: dde:Dde_3122 dolichyl-phosphate-mannose-protein mannosyltransferase family protein.
 
  
 0.717
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.640
DvMF_2499
Cytochrome c class III; Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin.
  
 
   0.629
DvMF_0671
TIGRFAM: EpsI family protein; KEGG: dde:Dde_0848 hypothetical protein.
    
 
 0.614
DvMF_0672
TIGRFAM: eight transmembrane protein EpsH; PFAM: Eight transmembrane protein EpsH; KEGG: dde:Dde_0847 hypothetical protein.
    
 
 0.614
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.534
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.