Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
DvMF_2318PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: sth:STH1192 5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family. (234 aa)    
Predicted Functional Partners:
folD
Methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
  
 
 0.926
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
    
 0.915
DvMF_2317
PFAM: protein of unknown function DUF152; KEGG: dde:Dde_3616 hypothetical protein.
 
   
 0.867
DvMF_2314
PFAM: aminotransferase class IV; KEGG: dde:Dde_3619 hypothetical protein.
     
 0.663
DvMF_2316
PFAM: glutamine amidotransferase class-I; KEGG: dde:Dde_3617 aminodeoxychorismate synthase, glutamine amidotransferase subunit.
       0.660
DvMF_2315
PFAM: Chorismate binding-like; KEGG: dde:Dde_3618 aminodeoxychorismate synthase, subunit I.
     
 0.641
DvMF_0913
PFAM: Rhomboid family protein; KEGG: dde:Dde_1446 rhomboid family protein.
  
  
 0.607
DvMF_3108
PFAM: Rhomboid family protein; KEGG: dde:Dde_2421 rhomboid family protein.
  
  
 0.607
pheT
KEGG: dde:Dde_2634 phenylalanyl-tRNA synthetase beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
  
 0.514
groS
Chaperonin Cpn10; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.
 
   
 0.489
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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