STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2319KEGG: dde:Dde_3615 phosphoesterase, Icc protein-like. (225 aa)    
Predicted Functional Partners:
DvMF_2497
KEGG: dde:Dde_3184 hypothetical protein.
  
     0.593
DvMF_0962
KEGG: dde:Dde_1035 hypothetical protein.
  
     0.564
DvMF_0815
KEGG: dde:Dde_1543 hypothetical protein.
  
     0.562
DvMF_0363
SMART: TRASH domain protein; KEGG: dde:Dde_1968 TRASH.
  
     0.559
DvMF_1387
PFAM: ATP synthase I; KEGG: dde:Dde_2699 hypothetical protein.
  
     0.498
DvMF_0816
PFAM: acetyl-CoA carboxylase alpha subunit; KEGG: dde:Dde_1542 acetyl-CoA carboxylase.
  
     0.426
DvMF_1183
KEGG: dde:Dde_0979 hypothetical protein.
  
     0.414
DvMF_2318
PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: sth:STH1192 5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
       0.401
DvMF_2317
PFAM: protein of unknown function DUF152; KEGG: dde:Dde_3616 hypothetical protein.
       0.400
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.