STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2333Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dol:Dole_1356 histidine kinase. (607 aa)    
Predicted Functional Partners:
DvMF_2334
PFAM: response regulator receiver; KEGG: dol:Dole_1358 response regulator receiver protein.
 
 0.944
DvMF_2755
PFAM: response regulator receiver; KEGG: dde:Dde_2769 multi-sensor hybrid histidine kinase.
 
 
 0.808
DvMF_1772
PFAM: response regulator receiver; KEGG: sfu:Sfum_0654 response regulator receiver protein.
 
 
 0.784
DvMF_1769
PFAM: response regulator receiver; KEGG: dde:Dde_0321 response regulator receiver domain-containing protein.
 
   0.753
DvMF_1991
PFAM: response regulator receiver; KEGG: sfu:Sfum_0648 response regulator receiver protein.
 
 0.749
DvMF_1988
PFAM: response regulator receiver; KEGG: sfu:Sfum_0648 response regulator receiver protein.
 
 
   0.728
DvMF_2273
KEGG: dde:Dde_0370 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
 
 0.697
DvMF_1770
KEGG: sfu:Sfum_0655 hypothetical protein.
 
     0.693
DvMF_2346
PFAM: response regulator receiver; KEGG: sfu:Sfum_0648 response regulator receiver protein.
 
 
   0.686
DvMF_1730
Multi-sensor signal transduction histidine kinase; KEGG: dde:Dde_3465 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein.
 
 
 
 0.678
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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