Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2342PFAM: protein of unknown function DUF81; KEGG: sfu:Sfum_0626 protein of unknown function DUF81. (350 aa)    
Predicted Functional Partners:
DvMF_2343
KEGG: sfu:Sfum_0627 lipoprotein, putative.
  
  
 0.899
DvMF_2345
KEGG: sfu:Sfum_0629 hypothetical protein.
  
  
 0.793
DvMF_1985
KEGG: sfu:Sfum_0645 hypothetical protein.
 
   
 0.776
DvMF_2341
KEGG: sfu:Sfum_0625 hypothetical protein.
  
  
 0.774
DvMF_2104
KEGG: tbd:Tbd_2612 hypothetical protein.
 
     0.762
DvMF_2344
Hypothetical protein.
  
    0.744
DvMF_0704
KEGG: pth:PTH_2262 hypothetical protein.
 
     0.737
DvMF_1765
KEGG: afu:AF1562 hypothetical protein.
 
    0.659
DvMF_1805
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dde:Dde_0304 glyoxalase family protein.
  
     0.627
DvMF_2812
PFAM: protein of unknown function DUF81; KEGG: dol:Dole_2891 hypothetical protein.
  
     0.620
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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