STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2345KEGG: sfu:Sfum_0629 hypothetical protein. (278 aa)    
Predicted Functional Partners:
DvMF_2344
Hypothetical protein.
  
    0.813
DvMF_2342
PFAM: protein of unknown function DUF81; KEGG: sfu:Sfum_0626 protein of unknown function DUF81.
  
  
 0.711
DvMF_2343
KEGG: sfu:Sfum_0627 lipoprotein, putative.
  
  
 0.659
DvMF_2346
PFAM: response regulator receiver; KEGG: sfu:Sfum_0648 response regulator receiver protein.
     
 0.604
DvMF_2341
KEGG: sfu:Sfum_0625 hypothetical protein.
  
  
 0.560
DvMF_0703
PFAM: protein of unknown function DUF81; KEGG: pth:PTH_2261 predicted permease.
  
  
 0.457
DvMF_1984
PFAM: protein of unknown function DUF81; KEGG: sfu:Sfum_0644 protein of unknown function DUF81.
  
  
 0.433
DvMF_2103
PFAM: protein of unknown function DUF81; KEGG: tbd:Tbd_2613 hypothetical protein.
  
  
 0.433
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.