STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2347KEGG: dde:Dde_0307 hypothetical protein. (310 aa)    
Predicted Functional Partners:
DvMF_1399
PFAM: Ribosomal small subunit Rsm22; KEGG: dde:Dde_2712 hypothetical protein.
  
     0.671
DvMF_1065
KEGG: dde:Dde_2545 hypothetical protein.
  
     0.664
DvMF_1066
KEGG: dde:Dde_2546 hypothetical protein.
  
     0.640
DvMF_1072
KEGG: dde:Dde_2550 hypothetical protein.
  
     0.600
DvMF_0758
PFAM: SNARE associated Golgi protein; KEGG: dde:Dde_1595 hypothetical protein.
 
     0.536
DvMF_0764
PFAM: UvrD/REP helicase; KEGG: dde:Dde_1588 ATP-dependent DNA helicase UvrD.
  
     0.513
DvMF_1416
KEGG: eba:ebA616 hypothetical protein.
  
     0.503
DvMF_0405
KEGG: dde:Dde_2070 hypothetical protein.
  
     0.464
DvMF_0765
KEGG: dde:Dde_1587 hypothetical protein.
  
     0.443
DvMF_3036
PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: dde:Dde_1301 thiol:disulfide interchange protein-like.
  
     0.415
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.