STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2349PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0309 ABC transporter, permease protein, putative. (281 aa)    
Predicted Functional Partners:
DvMF_2348
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0308 ABC transporter, permease protein, putative.
  
  0.996
DvMF_1199
PFAM: extracellular solute-binding protein family 1; KEGG: dde:Dde_0759 hypothetical protein.
 
  
  0.976
DvMF_1924
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_0213 ATPase.
 
 
 0.948
DvMF_1925
PFAM: aminoglycoside phosphotransferase; KEGG: dde:Dde_0214 hypothetical protein.
  
     0.766
DvMF_1586
PFAM: extracellular solute-binding protein family 1; KEGG: pmu:PM1457 hypothetical protein.
  
  
 0.667
DvMF_2261
KEGG: rpa:RPA1389 hypothetical protein.
  
  
 0.667
DvMF_1498
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_3105 ATPase.
  
  
 0.556
DvMF_1499
PFAM: periplasmic binding protein; KEGG: dde:Dde_3106 iron compound ABC transporter, periplasmic iron compount-binding protein, putative.
  
  
 0.519
DvMF_2969
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: hch:HCH_01472 ABC-type spermidine/putrescine transport system, ATPase components; Belongs to the ABC transporter superfamily.
 
  
 0.497
DvMF_2350
Diguanylate cyclase with PAS/PAC and GAF sensors; KEGG: syf:Synpcc7942_1811 diguanylate cyclase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
       0.435
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.