STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fur-2Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: dde:Dde_3674 ferric uptake regulator family protein; Belongs to the Fur family. (131 aa)    
Predicted Functional Partners:
DvMF_0219
Peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: aae:aq_486 alkyl hydroperoxide reductase.
  
  
 0.701
DvMF_2367
PFAM: Rubrerythrin; KEGG: dde:Dde_1222 rubrerythrin.
  
  
 0.690
DvMF_0402
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: dde:Dde_2067 thioredoxin; Belongs to the thioredoxin family.
  
 
 0.676
DvMF_3175
PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_1320 rubrerythrin, putative.
  
  
 0.675
DvMF_2368
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: sfu:Sfum_0689 rubredoxin-type Fe(Cys)4 protein; Belongs to the rubredoxin family.
  
  
 0.663
DvMF_2088
KEGG: dde:Dde_0885 hypothetical protein.
  
    0.644
DvMF_2834
KEGG: dde:Dde_1143 hypothetical protein.
  
    0.644
DvMF_2089
PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_3337 nigerythrin.
  
  
 0.641
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.614
DvMF_0477
Putative RNA polymerase, sigma 70 family subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
 
 0.598
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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