STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2386KEGG: lip:LI1001 cytochrome c nitrite reductase small subunit. (158 aa)    
Predicted Functional Partners:
DvMF_2385
Nitrite reductase (cytochrome; PFAM: cytochrome c552; KEGG: lip:LI1002 chain A, cytochrome c nitrite reductase; Belongs to the cytochrome c-552 family.
 
 0.998
DvMF_1490
Nitrite reductase (cytochrome; PFAM: cytochrome c552; KEGG: lip:LI1002 chain A, cytochrome c nitrite reductase; Belongs to the cytochrome c-552 family.
 
 0.993
hcp
Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
    
 0.916
nifH
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
     
 0.912
DvMF_0070
PFAM: Nitrate reductase gamma subunit; KEGG: dde:Dde_2271 nitrate reductase, gamma subunit, putative.
     
 0.910
DvMF_1491
KEGG: lip:LI1001 cytochrome c nitrite reductase small subunit.
  
  
 
0.904
DvMF_2099
TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: dde:Dde_0104 L-glutamine synthetase.
     
 0.903
DvMF_1872
PFAM: Acetamidase/Formamidase; KEGG: gka:GK1391 acetamidase/formamidase.
   
 
  0.901
DvMF_0241
PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_1703 hypothetical protein.
     
  0.900
DvMF_0766
PFAM: 2-nitropropane dioxygenase NPD; KEGG: lip:LI1075 dioxygenases related to 2-nitropropane dioxygenase.
     
  0.900
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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