Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_2387KEGG: sfu:Sfum_1725 glutamate synthase (NADPH). (375 aa)    
Predicted Functional Partners:
DvMF_2389
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; glutamate synthase alpha subunit domain protein; KEGG: sfu:Sfum_1723 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
 0.998
DvMF_2388
Ferredoxin-dependent glutamate synthase; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; ferredoxin-dependent glutamate synthase; KEGG: sfu:Sfum_1724 ferredoxin-dependent glutamate synthase; Belongs to the glutamate synthase family.
 
 
 0.984
DvMF_0640
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: gur:Gura_0999 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
 0.933
DvMF_0446
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_2086 putative glutamate synthase subunit beta.
  
 0.925
DvMF_0938
TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_1250 putative oxidoreductase.
  
 0.925
DvMF_2665
KEGG: dde:Dde_1218 hypothetical protein.
 
 
 0.798
DvMF_0544
PFAM: glutamate synthase alpha subunit domain protein; KEGG: dde:Dde_1816 glutamate synthase (NADPH) GltB3 subunit.
  
   0.789
DvMF_0546
Glutamate synthase (NADPH); PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; ferredoxin-dependent glutamate synthase; KEGG: dde:Dde_1814 glutamate synthase (NADPH) GltB2 subunit; Belongs to the glutamate synthase family.
  
 
 0.761
DvMF_2933
PFAM: glutaredoxin; KEGG: dde:Dde_2739 hypothetical protein.
 
     0.552
DvMF_2934
KEGG: dde:Dde_2738 hypothetical protein.
  
   
 0.550
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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