STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2397KEGG: dde:Dde_0264 hypothetical protein. (274 aa)    
Predicted Functional Partners:
DvMF_2733
PFAM: von Willebrand factor type A; KEGG: dde:Dde_2368 von Willebrand factor, type A.
  
     0.765
DvMF_3143
PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1486 glycosyl transferase, group 2 family protein.
  
     0.761
DvMF_1927
PFAM: glycosyl transferase family 2; KEGG: dde:Dde_0215 glycosyl transferase, group 2 family protein.
  
     0.758
DvMF_2732
PFAM: TadE family protein; KEGG: dde:Dde_2369 hypothetical protein.
  
     0.755
DvMF_3144
PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1487 glycosyl transferase, group 2 family protein.
  
     0.749
DvMF_1952
PFAM: glycosyl transferase family 2; KEGG: dde:Dde_0337 glycosyl transferase, group 2 family protein.
  
     0.713
DvMF_2395
KEGG: dde:Dde_0337 glycosyl transferase, group 2 family protein.
  
     0.703
DvMF_0206
KEGG: dde:Dde_1679 hypothetical protein.
  
     0.670
DvMF_1268
PFAM: Mu Gam family protein; KEGG: dde:Dde_3354 host-nuclease inhibitor protein Gam, putative.
  
     0.647
DvMF_1831
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: tle:Tlet_2020 regulatory protein MarR.
 
     0.600
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.