Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_2402KEGG: rru:Rru_A2277 nickel ABC transporter, periplasmic nickel-binding; TIGRFAM: nickel ABC transporter, periplasmic nickel-binding protein; PFAM: extracellular solute-binding protein family 5. (538 aa)    
Predicted Functional Partners:
DvMF_2400
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ppw:PputW619_3007 nickel ABC transporter, permease subunit NikC.
 
 0.988
DvMF_2401
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mrd:Mrad2831_6075 nickel ABC transporter, permease subunit NikB.
 0.987
DvMF_2398
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rru:Rru_A2273 nickel transporter ATP-binding protein.
 
 
 0.958
DvMF_2399
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: kpn:KPN_03853 ATP-binding protein of nickel transport system.
 
 0.954
DvMF_0921
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_2594 oligopeptide ABC transporter, permease protein.
 0.939
DvMF_2110
KEGG: dde:Dde_3778 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.928
DvMF_0920
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_2593 oligopeptide ABC transporter, permease protein.
 0.902
DvMF_2156
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: sfu:Sfum_2391 ABC transporter related.
  
 
 0.859
DvMF_1827
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0273 oligopeptide/dipeptide ABC transporter, permease protein.
 
 0.855
DvMF_0941
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1055 ATPase.
     
 0.838
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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