Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DvMF_2408PFAM: major facilitator superfamily MFS_1; KEGG: bpe:BP2229 putative inner membrane transport protein. (856 aa)    
Predicted Functional Partners:
DvMF_2407
KEGG: hch:HCH_03644 ABC-type uncharacterized transport system, periplasmic component.
 
  
 0.961
DvMF_2409
KEGG: pin:Ping_3332 hypothetical protein.
       0.795
DvMF_2419
TIGRFAM: type III secretion effector delivery regulator, TyeA family; type III secretion regulator YopN/LcrE/InvE/MxiC; PFAM: TyeA domain protein; KEGG: lip:LI1153 putative outer protein N.
  
    0.772
DvMF_2422
TIGRFAM: type III secretion low calcium response chaperone LcrH/SycD; PFAM: Tetratricopeptide TPR_3; KEGG: lip:LI1157 regulatory protein PcrH.
  
  
 0.749
DvMF_2426
TIGRFAM: type III secretion outer membrane pore, YscC/HrcC family; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: lip:LI1160 putative type III secretion protein YscC.
  
    0.671
DvMF_2438
TIGRFAM: type III secretion system apparatus protein YscQ/HrcQ; PFAM: surface presentation of antigens (SPOA) protein; KEGG: lip:LI1166 putative translocation protein in type III secretion.
  
    0.664
DvMF_1159
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: dde:Dde_1419 type I secretion membrane fusion protein, HlyD.
 
 0.594
DvMF_1168
Diaminopimelate epimerase-like protein; KEGG: bha:BH2071 hypothetical protein.
  
     0.584
DvMF_1100
PFAM: secretion protein HlyD family protein; KEGG: gbe:GbCGDNIH1_1724 multidrug resistance protein A.
  
 0.577
DvMF_2432
TIGRFAM: type III secretion apparatus lipoprotein, YscJ/HrcJ family; PFAM: secretory protein YscJ/FliF family protein; KEGG: lip:LI0543 LscJ.
  
  
 0.573
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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