Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DvMF_2416PFAM: Tetratricopeptide TPR_4; KEGG: lip:LI0547 NA. (119 aa)    
Predicted Functional Partners:
DvMF_2415
TIGRFAM: type III secretion protein, HrcV family; PFAM: type III secretion FHIPEP protein; KEGG: lip:LI0548 putative type III secretion pore protein.
  
  
 0.846
DvMF_2419
TIGRFAM: type III secretion effector delivery regulator, TyeA family; type III secretion regulator YopN/LcrE/InvE/MxiC; PFAM: TyeA domain protein; KEGG: lip:LI1153 putative outer protein N.
  
    0.837
DvMF_2417
Conserved hypothetical protein; KEGG: lip:LI1152 NA.
       0.810
DvMF_2414
TIGRFAM: type III secretion protein, HrpO family; PFAM: export protein FliQ family 3; KEGG: lip:LI0549 probable translocation protein in type III secretion.
  
  
 0.799
DvMF_2413
TIGRFAM: type III secretion protein SpaR/YscT/HrcT; PFAM: type III secretion system inner membrane R protein; KEGG: lip:LI0550 type III secretion component protein SctT.
  
    0.791
DvMF_2418
TIGRFAM: type III secretion chaperone SycN; KEGG: lip:LI0546 NA.
       0.790
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
  
 0.787
DvMF_2412
TIGRFAM: type III secretion protein, YscU/HrpY family; PFAM: type III secretion exporter; KEGG: lip:LI0551 translocation protein in type III secretion.
  
  
 0.771
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.767
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.760
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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