STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2425KEGG: bpa:BPP2239 hypothetical protein. (168 aa)    
Predicted Functional Partners:
DvMF_2424
KEGG: bbr:BB1620 putative outer protein D.
       0.573
DvMF_2427
TIGRFAM: type III secretion apparatus protein, YscD/HrpQ family; KEGG: lip:LI1161 NA.
       0.568
DvMF_2428
Hypothetical protein.
       0.568
DvMF_2426
TIGRFAM: type III secretion outer membrane pore, YscC/HrcC family; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: lip:LI1160 putative type III secretion protein YscC.
       0.565
DvMF_2422
TIGRFAM: type III secretion low calcium response chaperone LcrH/SycD; PFAM: Tetratricopeptide TPR_3; KEGG: lip:LI1157 regulatory protein PcrH.
       0.542
DvMF_2423
Hypothetical protein; KEGG: lip:LI1158 NA.
       0.542
DvMF_2429
Hypothetical protein.
       0.532
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.