Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_2427TIGRFAM: type III secretion apparatus protein, YscD/HrpQ family; KEGG: lip:LI1161 NA. (522 aa)    
Predicted Functional Partners:
DvMF_2426
TIGRFAM: type III secretion outer membrane pore, YscC/HrcC family; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: lip:LI1160 putative type III secretion protein YscC.
  
  
 0.946
DvMF_1736
PFAM: tyrosine protein kinase; Serine/threonine protein kinase-related; SMART: serine/threonine protein kinase; KEGG: dde:Dde_3468 serine/threonine protein kinase.
   
 
 0.902
DvMF_2432
TIGRFAM: type III secretion apparatus lipoprotein, YscJ/HrcJ family; PFAM: secretory protein YscJ/FliF family protein; KEGG: lip:LI0543 LscJ.
  
  
 0.902
DvMF_2415
TIGRFAM: type III secretion protein, HrcV family; PFAM: type III secretion FHIPEP protein; KEGG: lip:LI0548 putative type III secretion pore protein.
  
  
 0.900
DvMF_2423
Hypothetical protein; KEGG: lip:LI1158 NA.
  
  
 0.879
DvMF_2439
TIGRFAM: Yop virulence translocation R; PFAM: type III secretion system inner membrane P protein; KEGG: lip:LI0537 type III secretion system protein.
  
  
 0.814
DvMF_2428
Hypothetical protein.
       0.810
DvMF_1346
PFAM: Glu/Leu/Phe/Val dehydrogenase; KEGG: dde:Dde_1382 glutamate dehydrogenase (NAD).
    
 
 0.806
DvMF_2438
TIGRFAM: type III secretion system apparatus protein YscQ/HrcQ; PFAM: surface presentation of antigens (SPOA) protein; KEGG: lip:LI1166 putative translocation protein in type III secretion.
  
 
 0.790
DvMF_2413
TIGRFAM: type III secretion protein SpaR/YscT/HrcT; PFAM: type III secretion system inner membrane R protein; KEGG: lip:LI0550 type III secretion component protein SctT.
  
  
 0.782
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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