Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DvMF_2429Hypothetical protein. (84 aa)    
Predicted Functional Partners:
DvMF_2427
TIGRFAM: type III secretion apparatus protein, YscD/HrpQ family; KEGG: lip:LI1161 NA.
       0.781
DvMF_2426
TIGRFAM: type III secretion outer membrane pore, YscC/HrcC family; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: lip:LI1160 putative type III secretion protein YscC.
       0.771
DvMF_2428
Hypothetical protein.
       0.758
DvMF_2425
KEGG: bpa:BPP2239 hypothetical protein.
       0.544
DvMF_2430
Conserved hypothetical protein; KEGG: lip:LI0544 NA.
       0.488
DvMF_2424
KEGG: bbr:BB1620 putative outer protein D.
       0.409
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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