STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2433Conserved hypothetical protein; KEGG: lip:LI0542 NA. (245 aa)    
Predicted Functional Partners:
DvMF_2434
TIGRFAM: type III secretion apparatus protein, HrpE/YscL family; PFAM: flagellar assembly protein FliH; KEGG: lip:LI0541 type III secretion system protein.
       0.804
DvMF_2432
TIGRFAM: type III secretion apparatus lipoprotein, YscJ/HrcJ family; PFAM: secretory protein YscJ/FliF family protein; KEGG: lip:LI0543 LscJ.
       0.793
DvMF_2431
Hypothetical protein; KEGG: gga:395069 collagen, type II, alpha 1.
       0.723
DvMF_2436
PFAM: type III secretion YscO fmaily protein; KEGG: lip:LI0539 hypothetical protein.
       0.671
DvMF_2439
TIGRFAM: Yop virulence translocation R; PFAM: type III secretion system inner membrane P protein; KEGG: lip:LI0537 type III secretion system protein.
       0.650
DvMF_2438
TIGRFAM: type III secretion system apparatus protein YscQ/HrcQ; PFAM: surface presentation of antigens (SPOA) protein; KEGG: lip:LI1166 putative translocation protein in type III secretion.
       0.649
DvMF_2435
KEGG: lip:LI0540 type III secretion system ATPase; TIGRFAM: ATPase, FliI/YscN family; type III secretion apparatus H+-transporting two-sector ATPase; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase.
       0.646
DvMF_2437
TIGRFAM: type III secretion system needle length determinant; KEGG: lip:LI1165 NA.
       0.627
DvMF_2440
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: lip:LI1167 anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
       0.552
DvMF_2430
Conserved hypothetical protein; KEGG: lip:LI0544 NA.
       0.546
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.