Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_2446KEGG: dde:Dde_0540 phenylacetate-coenzyme A ligase, putative. (421 aa)    
Predicted Functional Partners:
DvMF_2447
PFAM: PDZ/DHR/GLGF domain protein; protein of unknown function DUF399; KEGG: dde:Dde_0541 PDZ/DHR/GLGF.
       0.827
DvMF_0447
PFAM: amino acid-binding ACT domain protein; KEGG: dde:Dde_2088 ACT domain-containing protein.
 
   0.505
DvMF_2322
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase_; KEGG: emi:Emin_0772 iron-containing alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.500
rplK
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
   
    0.489
DvMF_2146
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
  
 
 0.481
DvMF_2563
PFAM: protein of unknown function DUF721; KEGG: dde:Dde_3136 hypothetical protein.
  
     0.469
DvMF_2152
PFAM: thioesterase superfamily protein; KEGG: rci:LRC474 putative phenylacetic acid degradation protein.
 
  
 0.459
DvMF_3089
KEGG: dde:Dde_2440 putative lipoprotein.
  
     0.455
DvMF_1780
PFAM: Aldehyde Dehydrogenase_; KEGG: sfu:Sfum_1087 aldehyde dehydrogenase.
  
 
 0.452
DvMF_2633
PFAM: Aldehyde Dehydrogenase_; KEGG: dsy:DSY1102 hypothetical protein.
  
 
 0.452
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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