STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2447PFAM: PDZ/DHR/GLGF domain protein; protein of unknown function DUF399; KEGG: dde:Dde_0541 PDZ/DHR/GLGF. (561 aa)    
Predicted Functional Partners:
DvMF_2446
KEGG: dde:Dde_0540 phenylacetate-coenzyme A ligase, putative.
       0.805
DvMF_1860
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate:ferredoxin (flavodoxin) oxidoreductase; KEGG: dde:Dde_3237 pyruvate:ferredoxin (flavodoxin) oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
   
   0.598
DvMF_1161
PFAM: Hemolysin-type calcium-binding region; KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein.
 
   0.578
DvMF_0693
PFAM: protein of unknown function DUF1555; KEGG: dde:Dde_0404 hypothetical protein.
  
   0.516
DvMF_0694
PFAM: protein of unknown function DUF1555; KEGG: dde:Dde_0404 hypothetical protein.
  
   0.516
pheT
KEGG: dde:Dde_2634 phenylalanyl-tRNA synthetase beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
   
 
 0.516
DvMF_1495
PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; KEGG: asa:ASA_1675 hemolysin-type calcium-binding repeat-containing protein.
  
   0.516
DvMF_2050
KEGG: dde:Dde_0038 hypothetical protein.
  
   0.516
DvMF_2449
formamidopyrimidine-DNA glycosylase; KEGG: dde:Dde_0542 DNA-(apurinic or apyrimidinic site) lyase / formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: zinc finger Fpg domain protein; Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding; Belongs to the FPG family.
  
    0.513
DvMF_0692
PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dde:Dde_0822 hypothetical protein.
 
    0.505
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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