Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_2472KEGG: dde:Dde_3205 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II. (341 aa)    
Predicted Functional Partners:
DvMF_2473
PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: dde:Dde_3204 cytochrome d ubiquinol oxidase, subunit I.
 0.999
DvMF_2531
KEGG: dde:Dde_0291 cytochrome bd-type quinol oxidase subunit 1-like.
  
 0.996
DvMF_2530
KEGG: dde:Dde_0292 hypothetical protein.
  
 0.969
DvMF_0535
PFAM: cytochrome c oxidase subunit III; KEGG: dde:Dde_1824 cytochrome c oxidase, subunit III.
    
 0.849
DvMF_0536
Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
    
 0.849
DvMF_2690
KEGG: dde:Dde_2932 hypothetical protein.
    
 0.793
DvMF_0534
TIGRFAM: caa(3)-type oxidase, subunit IV; KEGG: dde:Dde_1825 Caa(3)-type oxidase, subunit IV.
     
  0.773
DvMF_0533
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
    
 0.761
DvMF_0538
Cytochrome c class I; Natural electron acceptor for a formate dehydrogenase.
     
 0.685
DvMF_0539
PFAM: cytochrome c class I; KEGG: dde:Dde_1821 cytochrome c-553.
     
 0.685
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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