Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2529PFAM: MscS Mechanosensitive ion channel; KEGG: lip:LI1173 3264: small-conductance mechanosensitive channel. (864 aa)    
Predicted Functional Partners:
DvMF_3033
KEGG: lip:LI0093 hypothetical protein.
  
     0.615
DvMF_0128
PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: dde:Dde_2198 multiple antibiotic resistance (MarC)-related proteins.
  
    0.520
DvMF_0399
PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: dde:Dde_1840 multiple antibiotic resistance (MarC)-related proteins.
  
    0.520
DvMF_2960
PFAM: Mg2 transporter protein CorA family protein; KEGG: lip:LI0097 CorA, CorA-like Mg2+ transporter protein.
 
   
 0.420
DvMF_0453
PFAM: TrkA-N domain protein; TrkA-C domain protein; Ion transport 2 domain protein; KEGG: dde:Dde_2095 TrkA family potassium uptake protein.
  
   
 0.417
DvMF_2755
PFAM: response regulator receiver; KEGG: dde:Dde_2769 multi-sensor hybrid histidine kinase.
     
 0.417
DvMF_0543
PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: amu:Amuc_0711 sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
     
 0.400
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.