Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_2532PFAM: cytochrome c class III; KEGG: dde:Dde_0561 cytochrome c family protein. (643 aa)    
Predicted Functional Partners:
DvMF_2531
KEGG: dde:Dde_0291 cytochrome bd-type quinol oxidase subunit 1-like.
     0.990
DvMF_2530
KEGG: dde:Dde_0292 hypothetical protein.
 
     0.906
DvMF_1387
PFAM: ATP synthase I; KEGG: dde:Dde_2699 hypothetical protein.
  
     0.650
DvMF_0611
KEGG: dde:Dde_1634 hypothetical protein.
  
     0.646
DvMF_0580
KEGG: dde:Dde_2617 hypothetical protein.
  
     0.636
DvMF_1550
KEGG: dde:Dde_0521 hypothetical protein.
  
     0.617
DvMF_2497
KEGG: dde:Dde_3184 hypothetical protein.
  
     0.615
DvMF_1183
KEGG: dde:Dde_0979 hypothetical protein.
  
     0.542
DvMF_1552
KEGG: dde:Dde_0524 hypothetical protein.
  
     0.536
DvMF_0962
KEGG: dde:Dde_1035 hypothetical protein.
  
     0.535
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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