STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2533Contains selenocysteine; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: dde:Dde_0813 formate dehydrogenase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (1010 aa)    
Predicted Functional Partners:
DvMF_2534
KEGG: dde:Dde_3514 formate dehydrogenase beta subunit.
 
 0.998
DvMF_0644
KEGG: sfu:Sfum_0037 formate dehydrogenase, beta subunit, putative.
 
 0.991
DvMF_0647
KEGG: dde:Dde_3514 formate dehydrogenase beta subunit.
 
 0.991
DvMF_1216
KEGG: dde:Dde_0718 formate dehydrogenase, beta subunit, putative.
 
 0.991
DvMF_2597
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0652 hypothetical protein.
 
 0.963
DvMF_1613
PFAM: molybdopterin binding domain; formylmethanofuran dehydrogenase subunit E region; KEGG: sfu:Sfum_0032 molybdopterin binding domain.
  
 
 0.933
DvMF_3187
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rru:Rru_A1426 4Fe-4S ferredoxin, iron-sulfur binding.
    
 0.905
purU
Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
    
  0.903
DvMF_0643
Contains selenocysteine; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sfu:Sfum_3510 formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 
0.903
DvMF_0646
KEGG: dde:Dde_3513 formate dehydrogenase alpha subunit; TIGRFAM: formate dehydrogenase, alpha subunit; Contains selenocysteine; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region.
  
  
 
0.903
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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