Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2556KEGG: dde:Dde_3708 hypothetical protein. (219 aa)    
Predicted Functional Partners:
DvMF_2557
KEGG: dde:Dde_3707 hypothetical protein.
 
     0.949
DvMF_0165
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mta:Moth_0451 4Fe-4S ferredoxin, iron-sulfur binding.
  
 0.938
DvMF_2555
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3709 ferredoxin, 4Fe-4S, putative.
 
 
 0.933
DvMF_2554
KEGG: dde:Dde_3710 acidic cytochrome c3.
 
  
 0.919
DvMF_2593
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_0648 hmc operon protein 6.
 
 
 0.859
DvMF_2552
PFAM: UspA domain protein; KEGG: dde:Dde_3712 universal stress protein.
 
     0.800
DvMF_2598
PFAM: cytochrome c class III; KEGG: dde:Dde_0653 high-molecular-weight cytochrome c.
 
  
 0.773
DvMF_2550
Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_3715 multi-sensor signal transduction histidine kinase.
 
  
 0.770
DvMF_2118
KEGG: dde:Dde_3773 hypothetical protein.
  
     0.723
DvMF_2689
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: dde:Dde_2933 molybdopterin oxidoreductase, molybdopterin-binding subunit, putative; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.714
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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