Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_2560Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bmj:BMULJ_02621 AraC subfamily transcriptional regulator. (333 aa)    
Predicted Functional Partners:
DvMF_2562
PFAM: ThiJ/PfpI domain protein; KEGG: gur:Gura_3528 ThiJ/PfpI domain protein.
 
    
0.612
rpoD
RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.563
DvMF_0808
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: psb:Psyr_0649 helix-turn-helix, AraC type:AraC protein, arabinose-binding/dimerisation.
 
 
 0.561
DvMF_2561
KEGG: ptm:GSPATT00013277001 hypothetical protein.
       0.505
DvMF_1576
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: scl:sce0089 transcriptional regulator, AraC family.
 
 
0.490
DvMF_3038
PFAM: regulatory protein TetR; KEGG: gme:Gmet_0803 transcriptional regulator, TetR family.
  
  
 0.476
DvMF_0477
Putative RNA polymerase, sigma 70 family subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
    
 
 0.452
DvMF_2559
Hypothetical protein.
       0.424
DvMF_1435
PFAM: peptidase S24 and S26 domain protein; KEGG: dde:Dde_2974 SOS mutagenesis protein UmuD; Belongs to the peptidase S24 family.
   
 
 0.414
DvMF_1614
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: bte:BTH_I1692 transcriptional regulator, AraC family, putative.
 
 
0.413
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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