Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
DvMF_2589PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rpc:RPC_0776 lysine exporter protein (LysE/YggA). (243 aa)    
Predicted Functional Partners:
DvMF_2130
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pau:PA14_69310 LysE family efflux protein.
  
  
 0.788
DvMF_1949
PFAM: protein of unknown function DUF6 transmembrane; KEGG: amr:AM1_C0051 DUF6 domain transmembrane protein.
 
   
 0.439
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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