Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DvMF_2590PFAM: response regulator receiver; KEGG: glo:Glov_1742 response regulator receiver protein. (131 aa)    
Predicted Functional Partners:
DvMF_0467
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: dde:Dde_2106 CheA signal transduction histidine kinase.
  
 0.917
DvMF_0619
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: dol:Dole_0871 CheA signal transduction histidine kinase.
  
 0.917
DvMF_0774
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: dde:Dde_1577 CheA signal transduction histidine kinase.
  
 0.917
DvMF_0775
PFAM: response regulator receiver; KEGG: dde:Dde_1576 response regulator receiver domain-containing protein.
  
  
  0.914
DvMF_1817
KEGG: dde:Dde_0281 chemotaxis protein CheX, putative.
   
 
 0.914
DvMF_0226
PFAM: response regulator receiver; KEGG: dde:Dde_1694 response regulator receiver domain-containing protein.
  
  
 
0.910
DvMF_0261
KEGG: dde:Dde_2148 chemotaxis protein CheZ, putative.
  
 
 0.910
DvMF_2010
PFAM: response regulator receiver; KEGG: dde:Dde_0384 response regulator receiver domain-containing protein.
  
 0.910
DvMF_2213
TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: dde:Dde_3585 surface presentation of antigens (SpoA) protein.
   
 0.910
DvMF_2860
PFAM: response regulator receiver; KEGG: dde:Dde_0774 response regulator receiver domain-containing protein.
  
  
 
0.909
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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