Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_2596PFAM: Polysulphide reductase NrfD; KEGG: dde:Dde_0651 hmc operon protein 3. (388 aa)    
Predicted Functional Partners:
DvMF_2597
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0652 hypothetical protein.
 
 0.981
DvMF_2598
PFAM: cytochrome c class III; KEGG: dde:Dde_0653 high-molecular-weight cytochrome c.
 
   
 0.941
DvMF_2594
KEGG: dde:Dde_0649 hmc operon protein 5.
 
  
 0.875
DvMF_2531
KEGG: dde:Dde_0291 cytochrome bd-type quinol oxidase subunit 1-like.
 
 
 
 0.861
DvMF_2593
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_0648 hmc operon protein 6.
 
  
 0.833
DvMF_2690
KEGG: dde:Dde_2932 hypothetical protein.
   
 
 0.828
hydB
Nickel-dependent hydrogenase large subunit; Catalyzes the reversible oxidoreduction of molecular hydrogen, in conjunction with a specific electron acceptor, cytochrome c3.
  
 
 0.806
DvMF_0273
PFAM: nickel-dependent hydrogenase large subunit; KEGG: dde:Dde_2135 periplasmic (NiFeSe) hydrogenase, large subunit, selenocysteine-containing.
  
 
 0.806
DvMF_1733
PFAM: nickel-dependent hydrogenase large subunit; KEGG: dde:Dde_3756 periplasmic (NiFe) hydrogenase, large subunit, isozyme 2; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
  
 
 0.801
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
  
 
 0.797
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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