STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2596PFAM: Polysulphide reductase NrfD; KEGG: dde:Dde_0651 hmc operon protein 3. (388 aa)    
Predicted Functional Partners:
DvMF_2597
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0652 hypothetical protein.
 
 0.984
DvMF_2598
PFAM: cytochrome c class III; KEGG: dde:Dde_0653 high-molecular-weight cytochrome c.
 
   
 0.939
DvMF_2594
KEGG: dde:Dde_0649 hmc operon protein 5.
 
  
 0.879
DvMF_2593
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_0648 hmc operon protein 6.
 
  
 0.832
DvMF_2531
KEGG: dde:Dde_0291 cytochrome bd-type quinol oxidase subunit 1-like.
 
 
 
 0.804
DvMF_0644
KEGG: sfu:Sfum_0037 formate dehydrogenase, beta subunit, putative.
 
 0.772
DvMF_1216
KEGG: dde:Dde_0718 formate dehydrogenase, beta subunit, putative.
 
 0.762
DvMF_2595
KEGG: dde:Dde_0650 hmc operon protein 4.
  
    0.747
DvMF_1693
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0657 iron-sulfur cluster-binding protein.
 
 0.744
DvMF_2548
KEGG: dde:Dde_3718 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
     0.741
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.