STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2609PFAM: inner-membrane translocator; KEGG: sat:SYN_00787 branched-chain amino acid transport system permease protein. (415 aa)    
Predicted Functional Partners:
DvMF_2610
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_0609 ATPase.
 
 0.998
DvMF_2611
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_0608 ATPase.
 
 0.996
DvMF_2608
PFAM: inner-membrane translocator; KEGG: dde:Dde_0611 high-affinity branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
0.991
DvMF_2607
PFAM: Extracellular ligand-binding receptor; KEGG: dde:Dde_0612 high-affinity branched chain amino acid ABC transporter, periplasmic branched chain amino acid-binding protein.
 
 
 0.990
DvMF_1163
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_3102 ABC transporter related.
 
 0.989
DvMF_1481
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xau:Xaut_0890 ABC transporter related.
 
 0.989
DvMF_2753
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_0261 ATPase.
 
 0.989
DvMF_2754
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_0262 ATPase.
 
 0.985
DvMF_1583
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU2008 branched-chain amino acid ABC transporter, ATP-binding protein.
 
 0.984
DvMF_1584
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_0310 ABC transporter related.
 
 0.984
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.