STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2632KEGG: dde:Dde_3122 dolichyl-phosphate-mannose-protein mannosyltransferase family protein. (596 aa)    
Predicted Functional Partners:
DvMF_2631
KEGG: dde:Dde_3123 hypothetical protein.
       0.798
DvMF_2630
KEGG: dde:Dde_3124 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; SMART: RNA binding S1 domain protein.
       0.786
DvMF_2291
PFAM: phosphoesterase PA-phosphatase related; KEGG: dde:Dde_0373 phosphoesterase, PA-phosphatase related.
 
  
 0.717
DvMF_1219
KEGG: dde:Dde_0714 transposase, putative.
  
     0.663
DvMF_0756
PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1596 glycosyl transferase, group 2 family protein.
 
  
 0.628
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
  
 0.597
DvMF_2629
PFAM: Cupin 2 conserved barrel domain protein; KEGG: mba:Mbar_A1827 hypothetical protein.
 
     0.539
DvMF_2499
Cytochrome c class III; Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin.
  
     0.494
DvMF_1550
KEGG: dde:Dde_0521 hypothetical protein.
  
     0.467
DvMF_0967
Putative transcriptional regulator, XRE family; PFAM: CBS domain containing protein; KEGG: dde:Dde_2604 CBS domain-containing protein.
  
     0.462
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.