Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_2645PFAM: peptidase U32; KEGG: dde:Dde_3095 U32 family peptidase. (430 aa)    
Predicted Functional Partners:
DvMF_1313
KEGG: dde:Dde_3758 hypothetical protein.
  
  
 0.587
DvMF_1835
KEGG: sgr:SGR_4544 putative methyltransferase.
  
  
 0.587
DvMF_1855
KEGG: dde:Dde_0428 glycosyltransferase-like protein.
  
  
 0.587
DvMF_2646
PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: dde:Dde_3094 phosphoesterase PHP-like.
       0.584
DvMF_1860
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate:ferredoxin (flavodoxin) oxidoreductase; KEGG: dde:Dde_3237 pyruvate:ferredoxin (flavodoxin) oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
 
 
 0.554
DvMF_2079
NmrA family protein; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: dde:Dde_0236 hypothetical protein.
   
 
 0.554
pcm
protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.
  
   0.529
DvMF_2644
Putative two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; KEGG: dde:Dde_3097 two component Fis family transcriptional regulator.
       0.515
DvMF_1521
Hypothetical protein; KEGG: csc:Csac_1537 NADH dehydrogenase (ubiquinone), 30 kDa subunit.
   
   0.513
DvMF_1595
PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: dps:DP1319 NADH dehydrogenase, subunit 9.
   
   0.513
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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