STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2647PFAM: protein of unknown function DUF343; KEGG: dde:Dde_3093 hypothetical protein; Belongs to the UPF0434 family. (66 aa)    
Predicted Functional Partners:
DvMF_2646
PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: dde:Dde_3094 phosphoesterase PHP-like.
       0.470
DvMF_1900
PFAM: acylneuraminate cytidylyltransferase; KEGG: dde:Dde_3687 3-deoxy-manno-octulosonate cytidylyltransferase.
  
    0.462
kdsB
3-deoxy-D-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
  
    0.462
DvMF_2649
PFAM: heat shock protein Hsp20; KEGG: dde:Dde_3091 HSP20 family protein; Belongs to the small heat shock protein (HSP20) family.
       0.448
DvMF_2648
PFAM: heat shock protein Hsp20; KEGG: dde:Dde_3092 HSP20 family protein; Belongs to the small heat shock protein (HSP20) family.
       0.446
DvMF_0357
PFAM: histidine triad (HIT) protein; KEGG: dde:Dde_1973 HIT family protein.
  
    0.417
DvMF_1561
PFAM: histidine triad (HIT) protein; KEGG: lip:LI0430 141aa long hypothetical histidine triad nucleotide-binding protein.
  
    0.417
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.