STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2659Cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. (404 aa)    
Predicted Functional Partners:
DvMF_2660
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
 
 0.999
DvMF_1953
PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dde:Dde_2459 ThiF protein, putative.
   
 0.960
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
    
 0.890
DvMF_0368
KEGG: dde:Dde_1959 hypothetical protein; Belongs to the sulfur carrier protein TusA family.
   
 
 0.886
DvMF_0997
PFAM: nitrogen-fixing NifU domain protein; KEGG: sat:SYN_02452 NifU-like domain protein.
 
 
 0.784
DvMF_2658
TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: dde:Dde_3080 cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
 
  
 0.780
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
  
 0.750
DvMF_0275
TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: dde:Dde_2049 alpha-isopropylmalate/homocitrate synthase family transferase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
 
  
 0.744
DvMF_1886
PFAM: HesB/YadR/YfhF-family protein; KEGG: dde:Dde_2018 HesB-like domain-containing protein.
 
  
 0.737
DvMF_0158
KEGG: dde:Dde_2018 HesB-like domain-containing protein; Contains selenocysteine; Belongs to the HesB/IscA family.
 
  
 0.715
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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