STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2660Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. (281 aa)    
Predicted Functional Partners:
DvMF_2659
Cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
 
 0.999
DvMF_1886
PFAM: HesB/YadR/YfhF-family protein; KEGG: dde:Dde_2018 HesB-like domain-containing protein.
 
 
 0.984
DvMF_0158
KEGG: dde:Dde_2018 HesB-like domain-containing protein; Contains selenocysteine; Belongs to the HesB/IscA family.
 
 
 0.982
DvMF_0159
KEGG: dde:Dde_2018 HesB-like domain-containing protein.
  
 
 0.978
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 
 0.978
DvMF_0914
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1445 ATPase.
  
  
 0.937
DvMF_0915
PFAM: SufBD protein; KEGG: dde:Dde_1444 hypothetical protein.
  
  
 0.930
DvMF_2803
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_2749 rubredoxin.
  
 
 0.904
DvMF_1860
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate:ferredoxin (flavodoxin) oxidoreductase; KEGG: dde:Dde_3237 pyruvate:ferredoxin (flavodoxin) oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
  
  
 0.894
DvMF_2368
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: sfu:Sfum_0689 rubredoxin-type Fe(Cys)4 protein; Belongs to the rubredoxin family.
  
 
 0.881
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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