STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2661PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_3077 metal dependent phosphohydrolase. (327 aa)    
Predicted Functional Partners:
DvMF_1366
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_2680 diguanylate cyclase.
 
 0.650
DvMF_0042
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mca:MCA0504 GGDEF domain-containing protein.
 
 0.566
DvMF_0617
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; KEGG: dde:Dde_1628 diguanylate cyclase/phosphodiesterase.
 
 
 0.560
DvMF_0509
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_1834 diguanylate cyclase.
 
 0.552
DvMF_2637
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; extracellular solute-binding protein family 3; KEGG: mag:amb3301 response regulator.
 
 0.549
DvMF_3203
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mag:amb3563 C4-dicarboxylate transport sensor protein DctB.
 
 0.523
DvMF_2762
TIGRFAM: diguanylate cyclase; hemerythrin-like metal-binding protein; PFAM: GGDEF domain containing protein; MASE1 domain protein; Hemerythrin HHE cation binding domain protein; KEGG: rfr:Rfer_4030 diguanylate cyclase.
 
 0.521
DvMF_1537
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_0569 diguanylate cyclase.
 
 
 0.520
DvMF_0556
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_1801 diguanylate cyclase.
 
 
 0.517
DvMF_2758
TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: azo:azo0498 GGDEF/PAS/PAC-domain containing protein.
 
 0.505
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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