STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2676Putative phage repressor; PFAM: CI repressor; peptidase S24 and S26 domain protein; KEGG: dde:Dde_2949 DNA-binding protein, putative. (231 aa)    
Predicted Functional Partners:
DvMF_2822
KEGG: dde:Dde_0994 hypothetical protein.
  
     0.758
DvMF_0405
KEGG: dde:Dde_2070 hypothetical protein.
 
     0.754
DvMF_0406
PFAM: Tetratricopeptide TPR_4; KEGG: dde:Dde_2071 response regulator receiver/SARP domain-containing protein.
  
     0.754
DvMF_2851
Diguanylate cyclase and serine/threonine protein kinase with TPR repeats; KEGG: dde:Dde_0788 TPR repeat-containing protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
  
     0.754
DvMF_0765
KEGG: dde:Dde_1587 hypothetical protein.
 
     0.753
DvMF_2836
KEGG: dde:Dde_1022 hypothetical protein.
  
     0.752
DvMF_0430
PFAM: protein of unknown function DUF1239; KEGG: lip:LI0454 hypothetical protein.
  
     0.728
DvMF_0479
KEGG: dde:Dde_2118 hypothetical protein.
  
     0.722
DvMF_1399
PFAM: Ribosomal small subunit Rsm22; KEGG: dde:Dde_2712 hypothetical protein.
  
     0.708
DvMF_0851
PFAM: Sporulation domain protein; KEGG: lip:LI0230 hypothetical protein.
  
     0.705
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.