STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2682KEGG: dde:Dde_3065 membrane-bound lytic murein transglycosylase B-like. (423 aa)    
Predicted Functional Partners:
DvMF_2823
Penicillin-binding protein 2; KEGG: dde:Dde_0993 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain.
   
 
 0.577
rlpA-2
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
     
 0.563
DvMF_2681
PFAM: ribonuclease BN; KEGG: dde:Dde_3064 ribonuclease BN, putative.
       0.550
DvMF_1122
Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: sfu:Sfum_4061 peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Belongs to the peptidase S11 family.
 
   
 0.499
DvMF_0961
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; KEGG: dde:Dde_1036 peptidoglycan glycosyltransferase.
   
 
 0.464
DvMF_0212
KEGG: dde:Dde_1682 hypothetical protein.
  
    0.458
DvMF_1294
KEGG: dde:Dde_3383 hypothetical protein.
  
     0.435
DvMF_1293
KEGG: dde:Dde_3382 hypothetical protein.
  
     0.432
DvMF_2218
PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; KEGG: dde:Dde_3580 peptidoglycan-binding LysM.
      
 0.431
trmJ
RNA methyltransferase, TrmH family, group 1; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA.
  
     0.428
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.