STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2690KEGG: dde:Dde_2932 hypothetical protein. (211 aa)    
Predicted Functional Partners:
DvMF_2687
PFAM: Polysulphide reductase NrfD; KEGG: dde:Dde_2935 molybdopterin oxidoreductase, transmembrane subunit, putative.
 
 
 
 0.982
DvMF_2689
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: dde:Dde_2933 molybdopterin oxidoreductase, molybdopterin-binding subunit, putative; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.976
DvMF_2688
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2934 molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit, putative.
 
 
 
 0.974
DvMF_0236
PFAM: peptidase M16 domain protein; KEGG: dde:Dde_1699 M16 family peptidase; Belongs to the peptidase M16 family.
   
 0.954
DvMF_0536
Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
  
 0.947
DvMF_2531
KEGG: dde:Dde_0291 cytochrome bd-type quinol oxidase subunit 1-like.
  
 
 0.943
DvMF_0533
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 0.913
DvMF_0535
PFAM: cytochrome c oxidase subunit III; KEGG: dde:Dde_1824 cytochrome c oxidase, subunit III.
  
 0.906
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
  
 
 0.898
DvMF_2051
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.
     
 0.881
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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