Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_2700PFAM: glycosyl transferase family 2; KEGG: glo:Glov_2749 protein of unknown function DUF268. (584 aa)    
Predicted Functional Partners:
rpsE
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
    
 0.948
nuoB
NADH-quinone oxidoreductase, B subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
    
 0.865
DvMF_2557
KEGG: dde:Dde_3707 hypothetical protein.
 
 0.859
nuoD
NADH dehydrogenase (quinone); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
    
 0.851
DvMF_2696
PFAM: glycosyl transferase family 2; KEGG: rpb:RPB_3840 glycosyl transferase, family 2.
 
 
 
0.849
DvMF_2704
PFAM: glycosyl transferase family 2; KEGG: rrs:RoseRS_4087 glycosyl transferase, family 2.
 
 
 
0.848
DvMF_2702
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ote:Oter_3246 ABC transporter related.
 
     0.845
DvMF_2701
PFAM: ABC-2 type transporter; KEGG: dde:Dde_2896 ABC transporter permease.
 
     0.842
DvMF_2699
PFAM: glycosyl transferase family 11; KEGG: dde:Dde_2877 alpha-1,2-fucosyltransferase, putative.
 
     0.840
DvMF_0405
KEGG: dde:Dde_2070 hypothetical protein.
  
 0.829
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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