STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2702PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ote:Oter_3246 ABC transporter related. (427 aa)    
Predicted Functional Partners:
DvMF_2701
PFAM: ABC-2 type transporter; KEGG: dde:Dde_2896 ABC transporter permease.
 
 0.999
DvMF_2696
PFAM: glycosyl transferase family 2; KEGG: rpb:RPB_3840 glycosyl transferase, family 2.
 
  
 0.870
DvMF_2704
PFAM: glycosyl transferase family 2; KEGG: rrs:RoseRS_4087 glycosyl transferase, family 2.
 
  
 0.870
DvMF_2700
PFAM: glycosyl transferase family 2; KEGG: glo:Glov_2749 protein of unknown function DUF268.
 
     0.845
DvMF_2697
PFAM: acyltransferase 3; KEGG: vpa:VPA0771 putative lipopolysaccharide modification acyltransferase.
  
  
 0.843
DvMF_2698
TIGRFAM: methyltransferase FkbM family; KEGG: dde:Dde_2875 hypothetical protein.
 
     0.817
DvMF_2699
PFAM: glycosyl transferase family 11; KEGG: dde:Dde_2877 alpha-1,2-fucosyltransferase, putative.
       0.806
DvMF_2705
PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_2583 glycosyl transferase family 2.
  
  
 0.803
DvMF_2703
KEGG: tde:TDE1418 hypothetical protein.
       0.773
DvMF_0689
TIGRFAM: polysaccharide export protein, PEP-CTERM sytem-associated; PFAM: polysaccharide export protein; KEGG: dde:Dde_0830 capsular polysaccharide transport protein.
  
  
 0.767
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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